posterior predictive
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Scalable Generalized Bayesian Online Neural Network Training for Sequential Decision Making
Duran-Martin, Gerardo, Sánchez-Betancourt, Leandro, Cartea, Álvaro, Murphy, Kevin
We introduce scalable algorithms for online learning and generalized Bayesian inference of neural network parameters, designed for sequential decision making tasks. Our methods combine the strengths of frequentist and Bayesian filtering, which include fast low-rank updates via a block-diagonal approximation of the parameter error covariance, and a well-defined posterior predictive distribution that we use for decision making. More precisely, our main method updates a low-rank error covariance for the hidden layers parameters, and a full-rank error covariance for the final layer parameters. Although this characterizes an improper posterior, we show that the resulting posterior predictive distribution is well-defined. Our methods update all network parameters online, with no need for replay buffers or offline retraining. We show, empirically, that our methods achieve a competitive tradeoff between speed and accuracy on (non-stationary) contextual bandit problems and Bayesian optimization problems.
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DeepRV: pre-trained spatial priors for accelerated disease mapping
Navott, Jhonathan, Jenson, Daniel, Flaxman, Seth, Semenova, Elizaveta
Recently introduced prior-encoding deep generative models (e.g., PriorVAE, $\pi$VAE, and PriorCVAE) have emerged as powerful tools for scalable Bayesian inference by emulating complex stochastic processes like Gaussian processes (GPs). However, these methods remain largely a proof-of-concept and inaccessible to practitioners. We propose DeepRV, a lightweight, decoder-only approach that accelerates training, and enhances real-world applicability in comparison to current VAE-based prior encoding approaches. Leveraging probabilistic programming frameworks (e.g., NumPyro) for inference, DeepRV achieves significant speedups while also improving the quality of parameter inference, closely matching full MCMC sampling. We showcase its effectiveness in process emulation and spatial analysis of the UK using simulated data, gender-wise cancer mortality rates for individuals under 50, and HIV prevalence in Zimbabwe. To bridge the gap between theory and practice, we provide a user-friendly API, enabling scalable and efficient Bayesian inference.
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Amortized In-Context Bayesian Posterior Estimation
Mittal, Sarthak, Bracher, Niels Leif, Lajoie, Guillaume, Jaini, Priyank, Brubaker, Marcus
Bayesian inference provides a natural way of incorporating prior beliefs and assigning a probability measure to the space of hypotheses. Current solutions rely on iterative routines like Markov Chain Monte Carlo (MCMC) sampling and Variational Inference (VI), which need to be re-run whenever new observations are available. Amortization, through conditional estimation, is a viable strategy to alleviate such difficulties and has been the guiding principle behind simulation-based inference, neural processes and in-context methods using pre-trained models. In this work, we conduct a thorough comparative analysis of amortized in-context Bayesian posterior estimation methods from the lens of different optimization objectives and architectural choices. Such methods train an amortized estimator to perform posterior parameter inference by conditioning on a set of data examples passed as context to a sequence model such as a transformer. In contrast to language models, we leverage permutation invariant architectures as the true posterior is invariant to the ordering of context examples. Our empirical study includes generalization to out-of-distribution tasks, cases where the assumed underlying model is misspecified, and transfer from simulated to real problems. Subsequently, it highlights the superiority of the reverse KL estimator for predictive problems, especially when combined with the transformer architecture and normalizing flows.
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